Tracer files from Lamarc

Q&A regarding the Lamarc program by Kuhner et al for MCMC coalescent-based population genetic inference

Moderator: lpsmith

Tracer files from Lamarc

Postby gbeans » Tue Nov 27, 2007 11:44 pm

Hi. I'm running Lamarc on a one population mtDNA dataset and another one population msat dataset (separately) using the bayesian approach. I wanted to check my runs using Tracer but no tracefiles were generated - is there a way to tell the program to generate them?

Thanks for your help

Gabrielle
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Postby lpsmith » Thu Nov 29, 2007 1:37 am

Yes--you can either turn this on in the XML (set the 'use-tracefile' tag to true) or (more easily) from the menu: Select "I" (Input and Output), then "A" (Write Tracer output to files). If you want, you can then select "T" (Prefix to use for all tracer files) to give those files unique names.
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Postby gbeans » Thu Nov 29, 2007 3:21 am

Ah actually I see I was running an older version of the program. I thought I had downloaded the most recent. The version I was running did not have the option to save tracer files.

Thanks for your help -

Gabrielle
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